CDS
| Accession Number | TCMCG080C25024 |
| gbkey | CDS |
| Protein Id | XP_027933940.1 |
| Location | complement(join(24406953..24407102,24407711..24407765,24407864..24407910,24408000..24408056,24408200..24408314,24408517..24408598,24408716..24408800,24408874..24408993,24409314..24409364,24409437..24409502,24409617..24409664,24409779..24409827,24409961..24410014,24410140..24410199,24410338..24410396,24410508..24410624,24410714..24410725)) |
| Gene | LOC114189546 |
| GeneID | 114189546 |
| Organism | Vigna unguiculata |
Protein
| Length | 408aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA521068 |
| db_source | XM_028078139.1 |
| Definition | flap endonuclease 1 isoform X1 [Vigna unguiculata] |
EGGNOG-MAPPER Annotation
| COG_category | L |
| Description | Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03032 [VIEW IN KEGG] ko03400 [VIEW IN KEGG] ko04147 [VIEW IN KEGG] |
| KEGG_ko |
ko:K04799
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03030
[VIEW IN KEGG] ko03410 [VIEW IN KEGG] ko03450 [VIEW IN KEGG] map03030 [VIEW IN KEGG] map03410 [VIEW IN KEGG] map03450 [VIEW IN KEGG] |
| GOs | - |
Sequence
| CDS: ATGGGTATTAAGGGTTTAACTAAGCTTTTGTCGGACAATGCTCCAAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTCGGTCGCAAGATTGCTGTTGATGCCAGCATGAGCATTTACCAGTTTCTTATTGTTGTTGGAAGAAGCGGAACCGAAATGCTCACTAATGAAGCCGGTGAAGTTACCAGTCATTTGCAAGGGATGTTTTCACGGACAATCAGACTTCTTGAAGCTGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCACCAGATTTGAAGAAACAAGAGCTGGCAAAACGTTATTCGAAGAGGGCAGATGCTACTGAGGATTTATCAGAAGCCTTAGAGAGTGCCAATAAAGAAGACATTGAGAAATTCAGTAAACGGACGGTGAAGGTGACAAAGCAGCATAATGATGACTGCAAAAGACTTTTAAGACTTATGGGCGTTCCCGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAATGTGCTGCACTTTGCAAAGCTGGAAAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACATTTGGTGCTCCTAAATTTCTTCGCCACTTAATGGATCCAAGCTCAAAAAAAATTCCAGTGATGGAATTTGAAACTGCAAAGATTTTAGAGGGGCTAAATCTGACCATGGACCAATTTATTGACGTATGCATTCTTTCTGGCTGTGATTATTGTGAAAGTATTCGAGGAATTGGGGGACAGACAGCTTTGAAACTCATACGTGAACATGGCTCGATCGAAAATATGCTGGAAAACATAAACAAAGAGAGGTACCAAATACCAGATAATTGGCCATATCAGGAGGCTCGGCAGCTTTTTAAAGAACCAATGGTCTTAACTGATGAAAAGGAACTTGATATTAAATGGACTGCTCCAGATGAAGAAGGGTTAATAACATTTCTAGTAAATGAGAATGGCTTCAACAGTGATAGAGTGACCAAGGCAATAGAAAAGATTAAAGCAGCAAAGAACAAATCATCGCAAGGCCGACTGGAATCATTTTTTAAACCCACAGCAAATCCATCAGTACCGATCAAACGCAAGGAAATCAAATTCATGCTTAGATCTTTCAAACCAGCAATTGAGCATAAGATGTTCTCTCTGCAAACTTGTAACTGGTCAAGGCCCATGGGTTTTGGCAACTTGAGCTTGCCAATGTATAATCTGGGTTCCGAGCTCCATACCTTTGTCTAG |
| Protein: MGIKGLTKLLSDNAPKSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGMKPVYVFDGKPPDLKKQELAKRYSKRADATEDLSEALESANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFETAKILEGLNLTMDQFIDVCILSGCDYCESIRGIGGQTALKLIREHGSIENMLENINKERYQIPDNWPYQEARQLFKEPMVLTDEKELDIKWTAPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKEIKFMLRSFKPAIEHKMFSLQTCNWSRPMGFGNLSLPMYNLGSELHTFV |